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Data Book for Summer Workshop on the Dynamic Brain
Background
Mouse visual system
Transgenic tools
Behavioral apparatus
Extracellular electrophysiology
Unit Quality Metrics
Calcium imaging
Ophys ephys comparison
Optotagging
Intrinsic Signal Imaging
Visual Coding — 2-photon
Dataset
Getting data from a session
Visual stimuli
Exercise: Evoked response
Cross session data
Analysis files and cell specimens table
Visual Coding — Neuropixels
Quick start guide
Accessing Neuropixels Visual Coding Data
Units
Receptive fields
Local field potential (LFP)
Optotagging Analysis
Full example of accessing Visual Coding Neuropixels data
Cheat sheet for visual coding Neuropixels
Other resources
Cell Type Look-up Table
Session data
Optotagging
Accessing cell type lookup table data
Identifying tagged neurons
Visual Behavior
Visual Behavior Task
Behavior Session Data
Visual Behavior Ophys
Visual Behavior Ophys Dataset
Visual Behavior Ophys Experiment Data
Tutorial Comparing Trial Types
Tutorial Downloading Data
Visual Behavior Neuropixels
Visual Behavior Neuropixels Dataset
Visual Behavior Neuropixels Session
Tutorial Aligning Neural Data to Stimuli
Tutorial Aligning Behavioral Data to Task Events
Tutorial Analyzing LFP data
EM Connectomics
Dataset Basics
Proofreading and Data Quality
Neuroglancer
Dash Apps
Setting up CAVEclient
Programmatic Access
Annotation Tables
Imagery and Segmentation
Skeletons
Meshes
MICrONS Functional Data
Coordinate Systems
Ultrastructure Resources
Glossary
References
Repository
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Cheat sheet for visual coding Neuropixels
Cheat sheet for visual coding Neuropixels
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vcnp-cheatsheet.pdf
