Diagnostics#
Diagnostics report compiled at: 2024-09-23 17:38:49.985155
Databook Version Info#
Remote : https://github.com/AllenSWDB/allenswdb.github.io.git
Branch : main
Commit Hash: 5f1a4f8eef37bd7160b97badb210d0ae922c834e
Executable Pages#
These pages contain executable Python code. Any failures will be listed here with an ❌. Hover over the failure icon to see what kind of error occurred.
Document |
Modified |
Method |
Run Time (s) |
Status |
|---|---|---|---|---|
2025-08-23 02:32 |
cache |
8.98 |
✅ |
|
2025-08-23 02:37 |
cache |
254.98 |
✅ |
|
2025-08-23 02:37 |
cache |
14.92 |
✅ |
|
2025-08-23 02:37 |
cache |
16.4 |
✅ |
|
2025-08-29 00:05 |
cache |
15.74 |
✅ |
|
2025-08-23 02:37 |
cache |
8.55 |
✅ |
|
2024-09-23 17:33 |
cache |
10.54 |
✅ |
|
2024-09-23 17:33 |
cache |
3.66 |
✅ |
|
2024-09-23 17:33 |
cache |
3.01 |
✅ |
|
2024-09-23 17:35 |
cache |
124.31 |
✅ |
|
2024-09-23 17:38 |
cache |
153.08 |
✅ |
|
2024-09-23 17:38 |
cache |
17.28 |
✅ |
|
2024-09-23 17:38 |
cache |
2.62 |
✅ |
|
physiology/ephys/cell-type-lookup-table/ctlut-accessing-data |
2024-09-23 17:40 |
cache |
91.7 |
✅ |
physiology/ephys/cell-type-lookup-table/ctlut-identifying-tagged-units |
2024-09-23 17:40 |
cache |
23.26 |
✅ |
2024-09-23 17:40 |
cache |
0.98 |
✅ |
|
physiology/ephys/np-ultra/npultra-psychedelics-accessing-data |
2025-08-20 18:48 |
cache |
135.16 |
✅ |
2024-09-23 17:41 |
cache |
11.76 |
✅ |
|
2024-09-23 17:43 |
cache |
138.4 |
✅ |
|
physiology/ephys/visual-behavior/VBN-Tutorial-Aligning_Behavior_Data_to_Task_Events |
2024-09-23 17:44 |
cache |
83.8 |
✅ |
physiology/ephys/visual-behavior/VBN-Tutorial-Aligning_Neural_Data_to_Stimuli |
2024-09-23 17:46 |
cache |
96.3 |
✅ |
physiology/ephys/visual-behavior/VBN-Tutorial-Analyzing_LFP_Data |
2024-09-23 17:49 |
cache |
163.89 |
✅ |
2024-09-23 17:33 |
cache |
0.94 |
✅ |
|
2024-09-23 17:52 |
cache |
211.82 |
✅ |
|
2024-09-23 17:56 |
cache |
200.5 |
✅ |
|
2024-09-23 17:33 |
cache |
0.94 |
✅ |
|
2024-09-23 18:01 |
cache |
312.81 |
✅ |
|
2024-09-23 18:01 |
cache |
17.29 |
✅ |
|
2024-09-23 18:03 |
cache |
142.3 |
✅ |
|
2024-09-23 18:06 |
cache |
136.03 |
✅ |
|
2024-09-23 18:09 |
cache |
207.27 |
✅ |
|
2024-09-23 18:09 |
cache |
1.02 |
✅ |
|
2024-09-23 18:13 |
cache |
229.11 |
✅ |
|
2025-08-20 17:56 |
cache |
31.23 |
✅ |
|
2025-09-24 17:08 |
cache |
3.1 |
❌ |
|
2024-09-23 17:40 |
cache |
0.98 |
✅ |
|
2024-09-23 18:22 |
cache |
548.44 |
✅ |
|
2024-09-23 18:22 |
cache |
7.78 |
✅ |
|
2024-09-23 18:23 |
cache |
45.82 |
✅ |
|
physiology/ophys/visual-behavior/VBO-Tutorial-Compare_trial_types |
2024-09-23 18:24 |
cache |
54.37 |
✅ |
physiology/ophys/visual-behavior/VBO-Tutorial-Downloading_data_and_exploring_the_manifest |
2024-09-23 18:25 |
cache |
36.38 |
✅ |
2024-09-23 18:35 |
cache |
594.77 |
✅ |
|
2024-09-23 18:35 |
cache |
31.33 |
✅ |
|
2024-09-23 18:35 |
cache |
13.57 |
✅ |
|
2024-09-23 18:36 |
cache |
11.03 |
✅ |
|
2024-09-23 18:36 |
cache |
18.23 |
✅ |
|
2024-09-23 18:36 |
cache |
10.33 |
✅ |
|
2025-08-20 03:17 |
cache |
17.01 |
✅ |
|
2024-09-23 18:40 |
cache |
220.74 |
✅ |
Environment#
Python Version#
3.10.12 | packaged by conda-forge | (main, Jun 23 2023, 22:40:32) [GCC 12.3.0]
Environments#
/opt/envs/allensdk
aiohttp==3.9.5
aiosignal==1.3.1
allensdk==2.16.2
argschema==3.0.4
asttokens==2.4.1
async-timeout==4.0.3
atomicwrites==1.4.1
attrs==23.2.0
blosc==1.11.2
blosc2==2.7.0
boto3==1.34.149
botocore==1.34.149
Brotli==1.1.0
cachetools==5.4.0
caveclient==5.22.0
certifi==2024.7.4
chardet==5.2.0
charset-normalizer==3.3.2
click==8.1.7
cloud-files==4.26.0
cloud-volume==10.1.0
comm==0.2.2
compressed_segmentation==2.3.1
contourpy==1.2.1
crc32c==2.4.1
cycler==0.12.1
dataclasses==0.6
debugpy==1.8.2
decorator==5.1.1
deflate==0.7.0
dill==0.3.8
distro==1.9.0
DracoPy==1.4.0
exceptiongroup==1.2.2
executing==2.0.1
fasteners==0.19
fastremap==1.15.0
fonttools==4.53.1
frozenlist==1.4.1
future==1.0.0
gevent==24.2.1
Glymur==0.13.4
google-api-core==2.19.1
google-apitools==0.5.32
google-auth==2.32.0
google-cloud-core==2.4.1
google-cloud-storage==2.18.0
google-crc32c==1.5.0
google-resumable-media==2.7.1
googleapis-common-protos==1.63.2
greenlet==3.0.3
h5py==3.11.0
hdmf==3.14.2
httplib2==0.22.0
idna==3.7
imageio==2.34.2
imageryclient==1.0.4
inflection==0.5.1
iniconfig==2.0.0
ipykernel==6.29.5
ipython==8.26.0
jedi==0.19.1
Jinja2==3.1.4
jmespath==1.0.1
joblib==1.4.2
json5==0.9.25
jsonschema==4.23.0
jsonschema-specifications==2023.12.1
jupyter_client==8.6.2
jupyter_core==5.7.2
kiwisolver==1.4.5
lazy_loader==0.4
lxml==5.2.2
Markdown==3.6
MarkupSafe==2.1.5
marshmallow==3.21.3
matplotlib==3.9.1
matplotlib-inline==0.1.7
meshparty==1.16.14
microviewer==1.7.1
msgpack==1.0.8
multidict==6.0.5
multiprocess==0.70.16
multiwrapper==0.1.1
ndindex==1.8
ndx-events==0.2.0
nest-asyncio==1.6.0
networkx==2.8.8
neuroglancer==2.40.1
nglui==3.3.5
nptyping==2.5.0
numexpr==2.10.1
numpy==1.23.5
oauth2client==4.1.3
orjson==3.10.6
packaging==24.1
pandas==1.5.3
parso==0.8.4
pathos==0.3.2
patsy==0.5.6
pexpect==4.9.0
pillow==10.4.0
platformdirs==4.2.2
pluggy==1.5.0
plyfile==1.0.3
pooch==1.8.2
posix-ipc==1.1.1
pox==0.3.4
ppft==1.7.6.8
prompt_toolkit==3.0.47
proto-plus==1.24.0
protobuf==5.27.2
psutil==6.0.0
psycopg2-binary==2.9.9
ptyprocess==0.7.0
pure_eval==0.2.3
py-cpuinfo==9.0.0
pyarrow==17.0.0
pyasn1==0.6.0
pyasn1_modules==0.4.0
Pygments==2.18.0
pymeshfix==0.17.0
pynrrd==1.0.0
pynwb==2.8.1
pyparsing==3.1.4
pysimdjson==6.0.2
pytest==8.3.3
python-dateutil==2.9.0.post0
python-jsonschema-objects==0.5.5
pytz==2024.2
pyvista==0.44.1
PyYAML==6.0.2
pyzmq==26.2.0
referencing==0.35.1
requests==2.32.3
requests-toolbelt==1.0.0
rpds-py==0.20.0
rsa==4.9
Rtree==1.3.0
ruamel.yaml==0.18.6
ruamel.yaml.clib==0.2.8
s3transfer==0.10.2
scikit-build==0.18.1
scikit-image==0.24.0
scikit-learn==1.5.1
scipy==1.10.1
scooby==0.10.0
seaborn==0.13.2
semver==3.0.2
shapely==2.0.6
SimpleITK==2.4.0
simplejpeg==1.7.6
simplejson==3.19.3
six==1.16.0
skeleton-plot==0.0.10
SQLAlchemy==2.0.35
stack-data==0.6.3
standard-transform==1.4.0
statsmodels==0.14.3
tables==3.10.1
tenacity==9.0.0
threadpoolctl==3.5.0
tifffile==2024.9.20
tomli==2.0.1
tornado==6.4.1
tqdm==4.66.5
traitlets==5.14.3
trimesh==4.4.9
typing_extensions==4.12.2
urllib3==2.2.3
vtk==9.3.1
wcwidth==0.2.13
webcolors==24.8.0
xarray==2023.1.0
yarl==1.11.1
zope.event==5.0
zope.interface==7.0.3
zstandard==0.23.0
/opt/envs/ccf
asttokens==2.4.1
brainglobe-atlasapi @ git+https://github.com/AllenNeuralDynamics/brainglobe-atlasapi.git@4afe54f3ca261f904fad4d0d34afde9c0242a566
brainglobe_space==1.0.2
certifi==2024.7.4
charset-normalizer==3.3.2
click==8.1.7
comm==0.2.2
contourpy==1.3.0
cycler==0.12.1
debugpy==1.8.5
decorator==5.1.1
exceptiongroup==1.2.2
executing==2.1.0
fonttools==4.54.0
idna==3.7
ipykernel==6.29.5
ipython==8.27.0
jedi==0.19.1
joblib==1.4.2
jupyter_client==8.6.3
jupyter_core==5.7.2
kiwisolver==1.4.7
markdown-it-py==3.0.0
matplotlib==3.9.1
matplotlib-inline==0.1.7
mdurl==0.1.2
meshio==5.3.5
nest-asyncio==1.6.0
numpy==2.0.1
packaging==24.1
pandas==2.2.2
parso==0.8.4
pexpect==4.9.0
pillow==10.4.0
platformdirs==4.3.6
prompt_toolkit==3.0.47
psutil==6.0.0
ptyprocess==0.7.0
pure_eval==0.2.3
pyarrow==17.0.0
Pygments==2.18.0
pyparsing==3.1.4
python-dateutil==2.9.0.post0
pytz==2024.1
pyzmq==26.2.0
requests==2.32.3
rich==13.7.1
scikit-learn==1.5.1
scipy==1.14.0
six==1.16.0
stack-data==0.6.3
threadpoolctl==3.5.0
tifffile==2024.7.24
tornado==6.4.1
traitlets==5.14.3
treelib==1.7.0
typing_extensions==4.12.2
tzdata==2024.1
urllib3==2.2.2
wcwidth==0.2.13
/opt/envs/ctlut
aiobotocore==2.13.1
aiohappyeyeballs==2.3.5
aiohttp==3.10.1
aioitertools==0.11.0
aiosignal==1.3.1
annotated-types==0.7.0
arrow==1.3.0
asciitree==0.3.3
asttokens==2.4.1
async-timeout==4.0.3
attrs==23.2.0
backports.tarfile==1.2.0
bidsschematools==0.7.2
blessed==1.20.0
botocore==1.34.131
bqplot==0.12.43
certifi==2024.7.4
cffi==1.17.0
charset-normalizer==3.3.2
ci-info==0.3.0
click==8.1.7
click-didyoumean==0.3.1
comm==0.2.2
contourpy==1.2.1
cryptography==43.0.0
cycler==0.12.1
dandi==0.62.4
dandischema==0.10.2
debugpy==1.8.2
decorator==5.1.1
dnspython==2.6.1
email_validator==2.2.0
etelemetry==0.3.1
exceptiongroup==1.2.2
executing==2.0.1
fasteners==0.19
fonttools==4.53.1
fqdn==1.5.1
frozenlist==1.4.1
fscacher==0.4.1
fsspec==2024.6.1
gast==0.4.0
h5py==3.11.0
hdmf==3.14.2
hdmf_zarr==0.8.0
humanize==4.10.0
idna==3.7
imageio==2.34.2
importlib-metadata==4.13.0
interleave==0.2.1
ipydatagrid==1.3.2
ipydatawidgets==4.3.2
ipyfilechooser==0.6.0
ipykernel==6.29.5
ipympl==0.9.4
ipython==8.26.0
ipython-genutils==0.2.0
ipyvolume==0.6.3
ipyvue==1.11.1
ipyvuetify==1.10.0
ipywebrtc==0.6.0
ipywidgets==8.1.3
isodate==0.6.1
isoduration==20.11.0
jaraco.classes==3.4.0
jaraco.context==5.3.0
jaraco.functools==4.0.2
jedi==0.19.1
jeepney==0.8.0
jmespath==1.0.1
joblib==1.4.2
jsonpointer==3.0.0
jsonschema==4.23.0
jsonschema-specifications==2023.12.1
jupyter_client==8.6.2
jupyter_core==5.7.2
jupyterlab_widgets==3.0.11
keyring==25.3.0
keyrings.alt==5.0.1
kiwisolver==1.4.5
lazy_loader==0.4
matplotlib==3.9.1
matplotlib-inline==0.1.7
more-itertools==10.4.0
multidict==6.0.5
natsort==8.4.0
ndx-grayscalevolume==0.0.2
ndx-icephys-meta==0.1.0
ndx-spectrum==0.2.2
nest-asyncio==1.6.0
networkx==3.3
numcodecs==0.13.0
numpy==1.26.4
nwbinspector==0.4.37
nwbwidgets==0.11.3
packaging==24.1
pandas==2.2.2
parso==0.8.4
patsy==0.5.6
pexpect==4.9.0
pillow==10.4.0
platformdirs==4.2.2
plotly==5.13.1
prompt_toolkit==3.0.47
psutil==6.0.0
ptyprocess==0.7.0
pure_eval==0.2.3
py2vega==0.6.1
pycparser==2.22
pycryptodomex==3.20.0
pydantic==2.8.2
pydantic_core==2.20.1
Pygments==2.18.0
pynwb==2.8.1
pyout==0.7.3
pyparsing==3.1.2
python-dateutil==2.9.0.post0
pythreejs==2.4.2
pytz==2024.1
PyYAML==6.0.2
pyzmq==26.0.3
referencing==0.35.1
requests==2.32.3
rfc3339-validator==0.1.4
rfc3987==1.3.8
rpds-py==0.19.1
ruamel.yaml==0.18.6
ruamel.yaml.clib==0.2.8
s3fs==2024.6.1
scikit-image==0.24.0
scipy==1.14.0
SecretStorage==3.3.3
semantic-version==2.10.0
six==1.16.0
stack-data==0.6.3
statsmodels==0.14.2
tenacity==9.0.0
threadpoolctl==3.5.0
tifffile==2024.7.24
tornado==6.4.1
tqdm==4.66.5
traitlets==5.14.3
traittypes==0.2.1
trimesh==4.4.4
types-python-dateutil==2.9.0.20240316
typing_extensions==4.12.2
tzdata==2024.1
uri-template==1.3.0
urllib3==2.2.2
wcwidth==0.2.13
webcolors==24.6.0
widgetsnbextension==4.0.11
wrapt==1.16.0
yarl==1.9.4
zarr==2.18.2
zarr-checksum==0.4.2
zipp==3.19.2